Variant report

Variant	rs4505938
Chromosome Location	chr5:113579485-113579486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10038304	0.85[EUR][1000 genomes]
rs10041267	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10043950	0.84[EUR][1000 genomes]
rs10045558	0.85[EUR][1000 genomes]
rs10463657	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10900693	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11241267	0.85[EUR][1000 genomes]
rs12153188	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12523408	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12652393	0.85[EUR][1000 genomes]
rs4074169	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4131322	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4429843	0.85[EUR][1000 genomes]
rs4460133	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4482897	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4615290	0.85[EUR][1000 genomes]
rs61415455	0.84[EUR][1000 genomes]
rs6594788	0.84[EUR][1000 genomes]
rs6594797	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6594801	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6859418	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6862991	0.84[EUR][1000 genomes]
rs6872938	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6891422	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6894277	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7701720	0.85[EUR][1000 genomes]
rs9326913	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882727	chr5:113548400-113602162	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029021	chr5:113551892-113599644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537865	chr5:113551892-113599644	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113579000-113579600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:113579000-113579600	Active TSS	Stomach Smooth Muscle	stomach
3	chr5:113579200-113579600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:113579200-113579800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:113579200-113579800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:113579400-113579800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:113579400-113580000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:113579400-113581400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:113579400-113585600	Weak transcription	Fetal Heart	heart

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