Variant report

Variant	rs4485936
Chromosome Location	chr5:44613819-44613820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:44612307..44614470-chr5:44621699..44623638,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10054521	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10066953	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10070248	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10079222	0.90[ASN][1000 genomes]
rs10512860	0.87[ASN][1000 genomes]
rs12374507	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12516346	0.80[ASN][1000 genomes]
rs13182481	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1351633	0.87[ASN][1000 genomes]
rs1384453	0.81[ASN][1000 genomes]
rs1482663	0.87[ASN][1000 genomes]
rs1482665	0.87[ASN][1000 genomes]
rs1482690	0.80[ASN][1000 genomes]
rs1482691	0.80[ASN][1000 genomes]
rs1905192	0.85[ASN][1000 genomes]
rs34787390	0.90[ASN][1000 genomes]
rs4463187	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4529201	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866776	0.82[ASN][1000 genomes]
rs4866905	0.90[ASN][1000 genomes]
rs58761628	0.85[ASN][1000 genomes]
rs6451763	0.85[ASN][1000 genomes]
rs6864776	0.82[ASN][1000 genomes]
rs6879342	0.80[ASN][1000 genomes]
rs6897963	0.90[ASN][1000 genomes]
rs7710996	0.82[ASN][1000 genomes]
rs9654396	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9800254	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs983940	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830278	chr5:44540863-44713312	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44613400-44614800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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