Variant report

Variant	rs9800254
Chromosome Location	chr11:63217933-63217934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10054521	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10066953	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10070248	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10079222	0.81[ASN][1000 genomes]
rs12374507	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13182481	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34787390	0.83[ASN][1000 genomes]
rs4463187	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4485936	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4529201	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4866905	0.81[ASN][1000 genomes]
rs6897963	0.81[ASN][1000 genomes]
rs9654396	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63216800-63220200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:63216800-63224600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:63217000-63219800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:63217000-63219800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:63217000-63220000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:63217000-63227200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:63217400-63220200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:63217400-63227200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:63217800-63218200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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