Variant report

Variant	rs4488852
Chromosome Location	chr3:162110714-162110715
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1015177	0.94[ASN][1000 genomes]
rs1031839	0.94[ASN][1000 genomes]
rs11917723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11924705	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11925580	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13068589	0.94[ASN][1000 genomes]
rs13068863	0.94[ASN][1000 genomes]
rs13071450	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13091347	0.94[ASN][1000 genomes]
rs2405742	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2405748	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34519160	0.94[ASN][1000 genomes]
rs35364208	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35463187	0.94[ASN][1000 genomes]
rs35615498	0.91[ASN][1000 genomes]
rs36167213	0.94[ASN][1000 genomes]
rs4092575	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4856639	0.88[ASN][1000 genomes]
rs4856640	0.83[ASN][1000 genomes]
rs4856690	0.85[ASN][1000 genomes]
rs4856691	0.94[ASN][1000 genomes]
rs4856692	0.94[ASN][1000 genomes]
rs4856693	0.94[ASN][1000 genomes]
rs4856694	0.91[ASN][1000 genomes]
rs62292862	0.94[ASN][1000 genomes]
rs62292863	0.94[ASN][1000 genomes]
rs6441478	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441479	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441480	0.94[ASN][1000 genomes]
rs6441500	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.94[ASN][1000 genomes]
rs6441501	0.94[ASN][1000 genomes]
rs6764631	0.88[ASN][1000 genomes]
rs6771669	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6783325	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6784880	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6787328	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6789378	0.94[ASN][1000 genomes]
rs6796163	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7375066	0.94[ASN][1000 genomes]
rs7431616	0.94[ASN][1000 genomes]
rs7610240	0.88[ASN][1000 genomes]
rs7618873	0.94[ASN][1000 genomes]
rs7621018	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7630775	0.94[ASN][1000 genomes]
rs7631036	0.81[ASN][1000 genomes]
rs7639668	0.94[ASN][1000 genomes]
rs7639669	0.94[ASN][1000 genomes]
rs7640405	0.94[ASN][1000 genomes]
rs7644526	0.86[ASN][1000 genomes]
rs7646771	0.94[ASN][1000 genomes]
rs9637415	0.83[ASN][1000 genomes]
rs9855439	0.94[ASN][1000 genomes]
rs9868505	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877724	chr3:162022959-162198135	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv877725	chr3:162036879-162216666	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1008920	chr3:162037850-162123354	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1002279	chr3:162061779-162156743	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv877726	chr3:162085820-162155076	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv877727	chr3:162085820-162198135	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877728	chr3:162085820-162236885	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv877729	chr3:162092216-162155076	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv460924	chr3:162094430-162130691	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv592155	chr3:162094430-162130691	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv460925	chr3:162096395-162142475	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv592156	chr3:162096395-162142475	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877730	chr3:162096395-162155076	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv877731	chr3:162096395-162198135	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162108200-162110800	Enhancers	HSMM	muscle

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