Variant report

Variant	rs4489096
Chromosome Location	chr5:116435955-116435956
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10043370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241414	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12658616	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13356416	0.98[EUR][1000 genomes]
rs4920949	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5015104	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7446534	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv882751	chr5:116349590-116453954	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116432000-116439400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:116433000-116437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:116433000-116438000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:116433000-116438000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:116433000-116438400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:116433000-116438400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:116433000-116439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:116433000-116440800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:116433000-116443000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:116433200-116437800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:116433200-116438000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:116433200-116438200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:116433200-116438400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:116433400-116437800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:116433400-116438000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:116434000-116437800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:116434200-116438400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:116434800-116436200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr5:116435600-116438200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links