Variant report

Variant	rs13356416
Chromosome Location	chr5:116439083-116439084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10043370	0.98[EUR][1000 genomes]
rs10052934	1.00[ASN][1000 genomes]
rs10057916	1.00[ASN][1000 genomes]
rs10065753	1.00[ASN][1000 genomes]
rs10478330	0.91[ASN][1000 genomes]
rs11241414	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658616	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28711158	1.00[ASN][1000 genomes]
rs4419625	1.00[ASN][1000 genomes]
rs4489096	0.98[EUR][1000 genomes]
rs4537091	0.94[ASN][1000 genomes]
rs4920949	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5015104	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6880933	0.94[ASN][1000 genomes]
rs6890015	1.00[ASN][1000 genomes]
rs7446534	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv882751	chr5:116349590-116453954	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116432000-116439400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:116433000-116439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:116433000-116440800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:116433000-116443000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:116437800-116439200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:116437800-116440000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:116437800-116440200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:116437800-116440400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:116438000-116439800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:116438000-116440200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:116438000-116440600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:116438000-116441600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:116438200-116440000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:116438400-116439600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:116438400-116439600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr5:116438400-116440000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:116438600-116439400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:116438800-116439200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:116439000-116439800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:116439000-116439800	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links