Variant report

Variant	rs6890015
Chromosome Location	chr5:116445828-116445829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10052934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057916	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065753	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478330	0.91[ASN][1000 genomes]
rs11241414	1.00[ASN][1000 genomes]
rs12658616	1.00[ASN][1000 genomes]
rs13356416	1.00[ASN][1000 genomes]
rs28711158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4419625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537091	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6880933	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv882751	chr5:116349590-116453954	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116439600-116447000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:116445600-116446000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:116445800-116446000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:116445800-116446000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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