Variant report

Variant	rs10478330
Chromosome Location	chr5:116468054-116468055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10052934	0.91[ASN][1000 genomes]
rs10057916	0.91[ASN][1000 genomes]
rs10065753	0.91[ASN][1000 genomes]
rs11241414	0.91[ASN][1000 genomes]
rs12658616	0.91[ASN][1000 genomes]
rs13356416	0.91[ASN][1000 genomes]
rs28711158	0.91[ASN][1000 genomes]
rs4419625	0.91[ASN][1000 genomes]
rs4537091	0.85[ASN][1000 genomes]
rs6880933	0.91[ASN][1000 genomes]
rs6890015	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752839	chr5:116461101-116504101	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116466200-116468600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:116466600-116468200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:116466600-116468200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:116466800-116468200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:116468000-116468200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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