Variant report

Variant	rs4490896
Chromosome Location	chr9:9726233-9726234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10511526	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs10816172	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10816175	0.84[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10816176	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10816177	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10977937	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs10977939	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10977941	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10977945	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10977946	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10977947	1.00[ASW][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10977948	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10977952	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs10977953	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs10977954	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10977956	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10977957	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10977963	0.90[EUR][1000 genomes]
rs10977970	0.86[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs1174579	0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs1174583	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1174584	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1174586	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs12236463	0.82[EUR][1000 genomes]
rs12236514	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12238315	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12238410	0.82[EUR][1000 genomes]
rs12551242	1.00[LWK][hapmap]
rs12551715	0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs12552265	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs12553611	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12554298	0.84[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12554427	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12554588	0.87[JPT][hapmap]
rs12554701	0.83[JPT][hapmap]
rs12554796	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12555110	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12555408	0.82[EUR][1000 genomes]
rs12684484	0.82[EUR][1000 genomes]
rs12686088	0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs12686662	0.82[EUR][1000 genomes]
rs13289361	0.82[GIH][hapmap];0.83[JPT][hapmap]
rs1408119	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1408120	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1408121	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1408122	0.81[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs16924740	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2147068	0.82[EUR][1000 genomes]
rs2209193	0.82[EUR][1000 genomes]
rs2211134	0.87[JPT][hapmap]
rs2252236	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2252243	0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2382039	0.87[JPT][hapmap]
rs2761710	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2821505	0.86[CHD][hapmap];0.82[JPT][hapmap]
rs2821512	0.91[JPT][hapmap]
rs2821513	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4132322	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs4237178	1.00[ASW][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs4628308	0.82[GIH][hapmap];0.82[JPT][hapmap]
rs4740986	0.85[JPT][hapmap]
rs4742615	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4742616	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4742618	0.82[EUR][1000 genomes]
rs981790	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1020468	chr9:9658670-9780975	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv539983	chr9:9658670-9780975	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892273	chr9:9673320-9730366	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv892274	chr9:9687742-9787587	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv613320	chr9:9711904-9750139	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv526471	chr9:9718066-9832245	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv613321	chr9:9724976-9758609	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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