Variant report

Variant	rs13289361
Chromosome Location	chr9:9707824-9707825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511526	0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap]
rs10977945	0.81[JPT][hapmap]
rs10977946	0.82[JPT][hapmap]
rs10977947	0.82[JPT][hapmap]
rs10977948	0.82[JPT][hapmap]
rs10977952	0.81[JPT][hapmap]
rs1174579	0.80[JPT][hapmap]
rs12551715	0.80[JPT][hapmap]
rs12553611	0.83[JPT][hapmap]
rs12554427	0.83[JPT][hapmap]
rs12554588	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12554701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12554722	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12554796	0.81[JPT][hapmap]
rs12555110	0.82[JPT][hapmap]
rs12686088	1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap]
rs16924740	0.81[JPT][hapmap]
rs2211134	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2382039	0.95[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap]
rs2761702	0.82[YRI][hapmap]
rs2761709	0.82[YRI][hapmap]
rs2761710	0.83[JPT][hapmap]
rs4132322	1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap]
rs4424321	1.00[YRI][hapmap]
rs4490896	0.82[GIH][hapmap];0.83[JPT][hapmap]
rs4628308	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs4740986	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs4742615	0.83[JPT][hapmap]
rs4742616	0.83[JPT][hapmap]
rs7047812	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1020468	chr9:9658670-9780975	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv539983	chr9:9658670-9780975	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892271	chr9:9673320-9718066	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv892272	chr9:9673320-9718066	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv892273	chr9:9673320-9730366	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv892274	chr9:9687742-9787587	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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