Variant report

Variant	rs4492928
Chromosome Location	chr13:39489736-39489737
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10870726	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1945517	0.89[EUR][1000 genomes]
rs36098057	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3935275	0.87[ASN][1000 genomes]
rs3935279	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4499117	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9315635	0.87[ASN][1000 genomes]
rs9532301	0.81[EUR][1000 genomes]
rs9532302	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9532303	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9548541	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9548543	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9566378	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9576641	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576642	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9646103	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39485200-39489800	Weak transcription	HMEC	breast
2	chr13:39488400-39490000	Enhancers	Liver	Liver
3	chr13:39488800-39489800	Weak transcription	HepG2	liver
4	chr13:39489400-39489800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:39489400-39489800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:39489400-39489800	Enhancers	Brain Hippocampus Middle	brain
7	chr13:39489400-39489800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:39489400-39489800	Enhancers	Brain Substantia Nigra	brain
9	chr13:39489400-39490000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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