Variant report

Variant	rs9532301
Chromosome Location	chr13:39477115-39477116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10870726	0.82[EUR][1000 genomes]
rs1894102	0.81[CEU][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36098057	0.85[EUR][1000 genomes]
rs4492928	0.81[EUR][1000 genomes]
rs9315626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9532300	0.84[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs9532302	0.85[EUR][1000 genomes]
rs9532303	0.85[EUR][1000 genomes]
rs9548534	0.85[JPT][hapmap]
rs9548537	0.86[ASN][1000 genomes]
rs9548541	0.84[CEU][hapmap];0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs9548543	0.82[EUR][1000 genomes]
rs9566378	0.81[EUR][1000 genomes]
rs9576641	0.85[EUR][1000 genomes]
rs9576642	0.85[EUR][1000 genomes]
rs9646103	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9646104	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39476200-39477400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:39476200-39477400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:39476200-39477600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:39476200-39477600	Enhancers	HMEC	breast
5	chr13:39476400-39477200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr13:39476400-39477600	Enhancers	Esophagus	oesophagus
7	chr13:39476400-39477600	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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