Variant report

Variant	rs9532300
Chromosome Location	chr13:39473781-39473782
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1894102	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2156810	0.87[ASN][1000 genomes]
rs9315626	0.94[ASN][1000 genomes]
rs9532301	0.90[ASN][1000 genomes]
rs9548534	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9548537	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9646103	0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9646104	0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39463000-39476200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:39472800-39473800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:39473200-39474000	Enhancers	Fetal Intestine Large	intestine
4	chr13:39473200-39474000	Enhancers	Fetal Muscle Leg	muscle
5	chr13:39473400-39474000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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