Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12586068	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1333511	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1894104	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1945504	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1945512	0.85[EUR][1000 genomes]
rs2156810	0.97[ASN][1000 genomes]
rs7324658	0.86[EUR][1000 genomes]
rs880165	0.81[CEU][hapmap]
rs9315626	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9532296	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9532300	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9532301	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9548518	0.87[EUR][1000 genomes]
rs9548519	0.87[EUR][1000 genomes]
rs9548534	0.91[JPT][hapmap]
rs9603459	0.85[EUR][1000 genomes]
rs9603460	0.84[EUR][1000 genomes]
rs9603461	0.85[EUR][1000 genomes]
rs9603463	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9646103	0.92[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9646104	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39463000-39476200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:39471400-39472200	Enhancers	Fetal Intestine Large	intestine
3	chr13:39471800-39472200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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