Variant report

Variant	rs4493516
Chromosome Location	chr4:47421958-47421959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10022793	0.88[EUR][1000 genomes]
rs10030377	0.88[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs10155173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155404	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13102764	0.88[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs13106855	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs13138813	0.88[CEU][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs28457819	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4356892	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs4591574	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs4635794	0.82[JPT][hapmap]
rs4695232	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs61003073	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6836637	0.85[CEU][hapmap]
rs7659411	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs7664913	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7693987	0.82[JPT][hapmap]
rs9998407	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4493516	ATP10D	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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