Variant report

Variant	rs28457819
Chromosome Location	chr4:47418991-47418992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:47411634..47414417-chr4:47418360..47422576,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10004682	0.80[ASN][1000 genomes]
rs10022793	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10029474	0.80[ASN][1000 genomes]
rs10030377	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10155173	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10155287	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10155404	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10938484	0.80[ASN][1000 genomes]
rs11724538	0.84[ASN][1000 genomes]
rs11729717	0.84[ASN][1000 genomes]
rs11944531	0.84[ASN][1000 genomes]
rs13102764	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13106855	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13138813	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28625886	0.80[ASN][1000 genomes]
rs28631883	0.80[ASN][1000 genomes]
rs4356892	0.84[ASN][1000 genomes]
rs4388055	0.80[ASN][1000 genomes]
rs4446282	0.80[ASN][1000 genomes]
rs4450898	0.80[ASN][1000 genomes]
rs4493516	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4591574	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4635794	0.80[ASN][1000 genomes]
rs4695232	0.84[ASN][1000 genomes]
rs57163868	0.80[ASN][1000 genomes]
rs61003073	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836637	0.86[ASN][1000 genomes]
rs7659411	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7664913	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671396	0.99[ASN][1000 genomes]
rs7693987	0.80[ASN][1000 genomes]
rs7699557	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9942270	0.80[ASN][1000 genomes]
rs9998407	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28457819	ATP10D	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain

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