Variant report

Variant	rs7671396
Chromosome Location	chr4:47415181-47415182
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10022793	0.96[ASN][1000 genomes]
rs10030377	0.96[ASN][1000 genomes]
rs10155173	0.83[AFR][1000 genomes]
rs11724538	0.83[ASN][1000 genomes]
rs11729717	0.83[ASN][1000 genomes]
rs11944531	0.83[ASN][1000 genomes]
rs13102764	0.85[ASN][1000 genomes]
rs13138813	0.87[ASN][1000 genomes]
rs28457819	0.99[ASN][1000 genomes]
rs4356892	0.83[ASN][1000 genomes]
rs4591574	0.96[ASN][1000 genomes]
rs4695232	0.83[ASN][1000 genomes]
rs61003073	0.99[ASN][1000 genomes]
rs6836637	0.84[ASN][1000 genomes]
rs7664913	0.99[ASN][1000 genomes]
rs7699557	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7671396	ATP10D	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain
2	chr4:47415000-47416000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:47415000-47416000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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