Variant report

Variant	rs4494169
Chromosome Location	chr1:172957361-172957362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10465482	0.83[AMR][1000 genomes]
rs10798248	0.83[AMR][1000 genomes]
rs10798249	0.83[AMR][1000 genomes]
rs10912514	0.83[AMR][1000 genomes]
rs1122312	0.92[AMR][1000 genomes]
rs1159824	0.92[AMR][1000 genomes]
rs1159825	0.92[AMR][1000 genomes]
rs1989627	0.83[AMR][1000 genomes]
rs2092357	0.83[AMR][1000 genomes]
rs2179426	0.92[AMR][1000 genomes]
rs2206367	0.83[AMR][1000 genomes]
rs2206368	0.83[AMR][1000 genomes]
rs2206369	0.83[AMR][1000 genomes]
rs2206370	0.83[AMR][1000 genomes]
rs2206372	0.83[AMR][1000 genomes]
rs2206373	0.83[AMR][1000 genomes]
rs2206376	1.00[AMR][1000 genomes]
rs2223520	0.83[AMR][1000 genomes]
rs2901695	1.00[AMR][1000 genomes]
rs6425197	0.83[AMR][1000 genomes]
rs6425198	0.83[AMR][1000 genomes]
rs6681826	0.83[AMR][1000 genomes]
rs6691232	1.00[AMR][1000 genomes]
rs7416452	0.83[AMR][1000 genomes]
rs7513007	0.83[AMR][1000 genomes]
rs7516072	0.83[AMR][1000 genomes]
rs7516980	0.83[AMR][1000 genomes]
rs7526839	0.83[AMR][1000 genomes]
rs7528210	0.83[AMR][1000 genomes]
rs7531536	0.83[AMR][1000 genomes]
rs7551105	0.83[AMR][1000 genomes]
rs7552839	0.83[AMR][1000 genomes]
rs960317	0.92[AMR][1000 genomes]
rs960318	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172947200-172959000	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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