Variant report

Variant	rs1159825
Chromosome Location	chr1:172962157-172962158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172957647..172960074-chr1:172961636..172964536,2	K562	blood:
2	chr1:172957647..172960074-chr1:172961636..172964536,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1033465	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10465482	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10465506	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10732990	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10753068	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10798248	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798249	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912514	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1122312	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159824	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467399	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1989627	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092357	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179426	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206367	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2206368	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206369	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206370	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206371	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206372	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206373	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206376	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223520	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2223521	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901695	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4494169	0.92[AMR][1000 genomes]
rs4916295	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425196	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425197	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425198	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425201	0.85[CHD][hapmap]
rs6659158	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6659338	0.95[ASN][1000 genomes]
rs6661650	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6671875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673681	0.85[CHD][hapmap]
rs6681826	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6691232	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7416452	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513007	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7516072	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7516980	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7518615	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7526839	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7528210	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7531129	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7531536	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537126	0.85[CHD][hapmap]
rs7543619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549493	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7551105	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7552839	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553670	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs960317	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172959000-172964200	Enhancers	HSMM	muscle
2	chr1:172959400-172964000	Enhancers	NHDF-Ad	bronchial
3	chr1:172959600-172964200	Enhancers	HSMMtube	muscle
4	chr1:172960600-172962400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:172960600-172967000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:172960600-172974000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:172960800-172962400	Weak transcription	NH-A	brain
8	chr1:172961000-172962400	Weak transcription	Osteobl	bone
9	chr1:172961000-172967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:172961200-172962200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:172961200-172962400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:172961200-172962600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:172961400-172962600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links