Variant report

Variant	rs6661650
Chromosome Location	chr1:172946916-172946917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1033465	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10465482	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10465506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10732990	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10753068	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10798248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912514	1.00[EUR][1000 genomes]
rs1122312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159824	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025670	1.00[AMR][1000 genomes]
rs1467399	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1989627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206367	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2206368	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206369	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206370	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206372	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206373	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223520	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2223521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425193	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425196	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425197	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425198	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6659158	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6659338	0.95[ASN][1000 genomes]
rs6671875	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681826	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6691232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7416452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513007	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7516072	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7516980	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7518615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7526839	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7528210	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7531129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7531536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543619	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7549493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7551105	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7552839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553670	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs960317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172942800-172947400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:172944600-172947200	Enhancers	Liver	Liver
3	chr1:172944600-172947200	Enhancers	HepG2	liver
4	chr1:172944800-172947200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:172944800-172947200	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:172944800-172947200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr1:172944800-172947200	Enhancers	Osteobl	bone
8	chr1:172944800-172947400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:172944800-172947800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:172944800-172948000	Enhancers	Stomach Mucosa	stomach
11	chr1:172944800-172950200	Enhancers	HUVEC	blood vessel
12	chr1:172945000-172947000	Enhancers	Hela-S3	cervix
13	chr1:172945000-172947400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:172945200-172947200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:172945200-172947200	Enhancers	HSMM	muscle
16	chr1:172945200-172947200	Enhancers	NHEK	skin
17	chr1:172945200-172947400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:172945200-172947400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:172945400-172947400	Enhancers	NHDF-Ad	bronchial
20	chr1:172945800-172949600	Weak transcription	NHLF	lung
21	chr1:172946000-172947200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:172946400-172947600	Enhancers	A549	lung
23	chr1:172946800-172947000	Enhancers	NH-A	brain

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