The 2.0 version of rSNPBase

Variant report

Variant rs6659338
Chromosome Location chr1:172942820-172942821
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172936200-172944800 Weak transcription Stomach Mucosa stomach
2 chr1:172938800-172943200 Enhancers HMEC breast
3 chr1:172938800-172943200 Enhancers NHEK skin
4 chr1:172939200-172944600 Weak transcription HepG2 liver
5 chr1:172939600-172945000 Weak transcription Hela-S3 cervix
6 chr1:172939800-172945400 Weak transcription NHLF lung
7 chr1:172940000-172944800 Weak transcription Muscle Satellite Cultured Cells --
8 chr1:172940400-172943200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:172940600-172944800 Weak transcription HUVEC blood vessel
10 chr1:172940600-172945200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:172940800-172944800 Weak transcription NH-A brain
12 chr1:172940800-172945800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr1:172941200-172944800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:172941400-172944000 Weak transcription Esophagus oesophagus
15 chr1:172941400-172945200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr1:172941600-172944600 Weak transcription A549 lung
17 chr1:172941600-172945000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:172941600-172946000 Weak transcription Placenta Amnion Placenta Amnion
19 chr1:172941800-172945200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:172942000-172943600 Weak transcription HSMMtube muscle
21 chr1:172942400-172943000 Weak transcription HSMM muscle
22 chr1:172942400-172943000 Enhancers Osteobl bone
23 chr1:172942400-172943200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr1:172942400-172945400 Weak transcription NHDF-Ad bronchial
25 chr1:172942600-172945200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:172942800-172944800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:172942800-172947400 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015