Variant report

Variant	rs1033465
Chromosome Location	chr1:172987730-172987731
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10465482	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10465506	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10732990	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10753068	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798248	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10798249	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10912514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10912516	0.82[AFR][1000 genomes]
rs10912517	0.82[AFR][1000 genomes]
rs10912518	0.82[AFR][1000 genomes]
rs1122312	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1159824	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1159825	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1467399	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1989627	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2092357	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2179426	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2206367	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2206368	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206369	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206370	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206371	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206372	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206373	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2206375	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2206376	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2223520	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2223521	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901695	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4916295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425193	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425195	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425196	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425197	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425198	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6425201	0.85[CHD][hapmap]
rs6659158	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659338	0.85[ASN][1000 genomes]
rs6661650	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6671875	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6673681	0.85[CHD][hapmap]
rs6681826	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6691232	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7416452	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7513007	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7516072	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7516980	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7518615	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7526839	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7528210	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7531129	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7531536	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7537126	0.85[CHD][hapmap]
rs7543619	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7549493	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7551105	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7552839	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7553670	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs960317	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs960318	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172982600-172990800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:172984400-172988400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:172984400-172990600	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:172984600-172988200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:172985200-172988600	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:172986600-172989400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:172987200-172990800	Enhancers	Primary B cells from cord blood	blood
8	chr1:172987400-172989400	Enhancers	GM12878-XiMat	blood

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