Variant report

Variant	rs7537126
Chromosome Location	chr1:173021349-173021350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:173021335-173021605	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
TNFSF18	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10798260	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912526	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912527	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034760	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12038100	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883927	0.85[EUR][1000 genomes]
rs35391404	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425201	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6673681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6682126	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173018400-173021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:173019600-173021600	Enhancers	NHEK	skin
3	chr1:173019600-173022200	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr1:173019600-173022600	Enhancers	HMEC	breast
5	chr1:173019800-173021800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:173019800-173022000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:173019800-173022600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:173019800-173022600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:173019800-173022600	Enhancers	Hela-S3	cervix
10	chr1:173020000-173022400	Enhancers	Liver	Liver
11	chr1:173020000-173022600	Enhancers	Stomach Mucosa	stomach
12	chr1:173020000-173023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:173020200-173021400	Weak transcription	A549	lung
14	chr1:173020200-173022200	Enhancers	Adipose Nuclei	Adipose
15	chr1:173020200-173022200	Enhancers	Fetal Lung	lung
16	chr1:173020400-173021400	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:173020400-173021400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:173020600-173021800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:173020600-173021800	Weak transcription	NH-A	brain
20	chr1:173020600-173022000	Weak transcription	HSMM	muscle
21	chr1:173020600-173022400	Enhancers	HUVEC	blood vessel
22	chr1:173020800-173021800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr1:173020800-173022000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr1:173021000-173021800	Enhancers	Fetal Kidney	kidney
25	chr1:173021000-173024000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr1:173021000-173024000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr1:173021200-173021800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:173021200-173022000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:173021200-173022000	Weak transcription	NHLF	lung

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