Variant report

Variant	rs35391404
Chromosome Location	chr1:173045800-173045801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10798260	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912526	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912527	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12034760	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12038100	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1883927	0.92[EUR][1000 genomes]
rs6425201	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6673681	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7537126	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173043800-173050000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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