Variant report

Variant	rs12038100
Chromosome Location	chr1:173022490-173022491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10798260	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912526	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912527	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034760	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883927	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35391404	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425201	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6673681	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537126	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173019600-173022600	Enhancers	HMEC	breast
2	chr1:173019800-173022600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:173019800-173022600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:173019800-173022600	Enhancers	Hela-S3	cervix
5	chr1:173020000-173022600	Enhancers	Stomach Mucosa	stomach
6	chr1:173020000-173023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:173021000-173024000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:173021000-173024000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:173022000-173022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:173022000-173025600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:173022000-173027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:173022200-173022600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:173022200-173022800	Flanking Active TSS	NHEK	skin
14	chr1:173022200-173025400	Weak transcription	Fetal Lung	lung
15	chr1:173022400-173031000	Weak transcription	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links