Variant report

Variant	rs10912526
Chromosome Location	chr1:173020574-173020575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10798260	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034760	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12038100	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883927	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35391404	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425201	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6673681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537126	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173017200-173020600	Flanking Active TSS	HUVEC	blood vessel
2	chr1:173018400-173021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:173019600-173021600	Enhancers	NHEK	skin
4	chr1:173019600-173022200	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr1:173019600-173022600	Enhancers	HMEC	breast
6	chr1:173019800-173020600	Enhancers	NH-A	brain
7	chr1:173019800-173020800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:173019800-173021000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr1:173019800-173021000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:173019800-173021200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:173019800-173021800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:173019800-173022000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:173019800-173022600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:173019800-173022600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:173019800-173022600	Enhancers	Hela-S3	cervix
16	chr1:173020000-173020600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:173020000-173020600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:173020000-173020600	Enhancers	HSMM	muscle
19	chr1:173020000-173020600	Enhancers	Osteobl	bone
20	chr1:173020000-173020800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr1:173020000-173021200	Enhancers	NHLF	lung
22	chr1:173020000-173022400	Enhancers	Liver	Liver
23	chr1:173020000-173022600	Enhancers	Stomach Mucosa	stomach
24	chr1:173020000-173023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:173020200-173020600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:173020200-173021000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr1:173020200-173021200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:173020200-173021400	Weak transcription	A549	lung
29	chr1:173020200-173022200	Enhancers	Adipose Nuclei	Adipose
30	chr1:173020200-173022200	Enhancers	Fetal Lung	lung
31	chr1:173020400-173021400	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:173020400-173021400	Weak transcription	Rectal Smooth Muscle	rectum

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