Variant report

Variant	rs6673681
Chromosome Location	chr1:173019182-173019183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10798260	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10912526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912527	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12034760	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12038100	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883927	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35391404	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6425201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6682126	0.93[YRI][hapmap]
rs7537126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173017000-173019200	Enhancers	HMEC	breast
2	chr1:173017000-173019200	Enhancers	NHEK	skin
3	chr1:173017200-173020600	Flanking Active TSS	HUVEC	blood vessel
4	chr1:173017400-173020400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:173017800-173019800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:173018000-173019400	Weak transcription	GM12878-XiMat	blood
7	chr1:173018200-173019800	Weak transcription	A549	lung
8	chr1:173018200-173020000	Weak transcription	NHLF	lung
9	chr1:173018200-173020200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:173018400-173019400	Weak transcription	Fetal Lung	lung
11	chr1:173018400-173019600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:173018400-173019800	Weak transcription	Hela-S3	cervix
13	chr1:173018400-173019800	Weak transcription	NH-A	brain
14	chr1:173018400-173020000	Weak transcription	HSMM	muscle
15	chr1:173018400-173020000	Weak transcription	Osteobl	bone
16	chr1:173018400-173020200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr1:173018400-173021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:173018600-173019800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:173018600-173019800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:173018800-173019800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:173018800-173019800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:173018800-173019800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:173018800-173019800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:173018800-173019800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:173018800-173019800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:173018800-173020000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:173018800-173020000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:173018800-173020000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:173018800-173020000	Weak transcription	NHDF-Ad	bronchial
30	chr1:173019000-173020000	Active TSS	HSMMtube	muscle
31	chr1:173019000-173020200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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