Variant report

Variant	rs6682126
Chromosome Location	chr1:173012874-173012875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173011823..173014538-chr1:173018391..173020709,2	K562	blood:

Variant related genes	Relation type
ENSG00000120337	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10912498	1.00[EUR][1000 genomes]
rs12078276	1.00[EUR][1000 genomes]
rs12097832	1.00[EUR][1000 genomes]
rs13376667	1.00[EUR][1000 genomes]
rs16845467	1.00[EUR][1000 genomes]
rs57630015	1.00[EUR][1000 genomes]
rs6425201	0.87[YRI][hapmap]
rs6673681	0.93[YRI][hapmap]
rs73034154	1.00[EUR][1000 genomes]
rs73034163	1.00[EUR][1000 genomes]
rs7529929	1.00[CEU][hapmap]
rs7537126	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173011400-173013600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:173011600-173013200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:173011600-173013200	Enhancers	Dnd41	blood
4	chr1:173011800-173013000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:173011800-173013000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:173011800-173013000	Enhancers	HMEC	breast
7	chr1:173012000-173013000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:173012000-173013000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:173012000-173013000	Enhancers	Hela-S3	cervix
10	chr1:173012000-173013000	Enhancers	HSMM	muscle
11	chr1:173012000-173013000	Flanking Active TSS	HUVEC	blood vessel
12	chr1:173012000-173013000	Enhancers	NHEK	skin
13	chr1:173012000-173013200	Enhancers	Stomach Mucosa	stomach
14	chr1:173012000-173013400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:173012200-173013000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:173012200-173013000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:173012200-173013000	Enhancers	HepG2	liver
18	chr1:173012200-173013000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr1:173012200-173013000	Enhancers	Osteobl	bone
20	chr1:173012200-173013200	Enhancers	HSMMtube	muscle
21	chr1:173012400-173013000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:173012400-173013000	Enhancers	NHDF-Ad	bronchial
23	chr1:173012600-173013000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:173012600-173013400	Enhancers	NH-A	brain
25	chr1:173012600-173017400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:173012600-173017400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr1:173012800-173013000	Enhancers	A549	lung
28	chr1:173012800-173016600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:173012800-173017200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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