Variant report

Variant	rs16845467
Chromosome Location	chr1:173106828-173106829
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10912498	1.00[EUR][1000 genomes]
rs12078276	1.00[EUR][1000 genomes]
rs12097832	1.00[EUR][1000 genomes]
rs13376667	1.00[EUR][1000 genomes]
rs57630015	1.00[EUR][1000 genomes]
rs6682126	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73034154	1.00[EUR][1000 genomes]
rs73034163	1.00[EUR][1000 genomes]
rs7529929	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16845467	ZNF558	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173104400-173108200	Weak transcription	HepG2	liver
2	chr1:173104400-173119200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:173106600-173107200	Enhancers	HSMMtube	muscle
4	chr1:173106800-173107000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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