Variant report

Variant	rs12097832
Chromosome Location	chr1:172929442-172929443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10912498	1.00[EUR][1000 genomes]
rs12078276	1.00[EUR][1000 genomes]
rs16845467	1.00[EUR][1000 genomes]
rs57630015	1.00[EUR][1000 genomes]
rs58897053	1.00[EUR][1000 genomes]
rs6682126	1.00[EUR][1000 genomes]
rs73034154	1.00[EUR][1000 genomes]
rs73034163	1.00[EUR][1000 genomes]
rs73038093	1.00[EUR][1000 genomes]
rs73038096	1.00[EUR][1000 genomes]
rs73038100	1.00[EUR][1000 genomes]
rs73040104	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172921600-172929600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:172928000-172930000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr1:172928400-172929600	Enhancers	Fetal Intestine Small	intestine
4	chr1:172928400-172930000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr1:172928800-172929800	Enhancers	HSMMtube	muscle
6	chr1:172928800-172930000	Enhancers	HUVEC	blood vessel
7	chr1:172928800-172930200	Enhancers	Colon Smooth Muscle	Colon
8	chr1:172928800-172930600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:172928800-172930600	Enhancers	Liver	Liver
10	chr1:172928800-172930800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:172929000-172929800	Enhancers	Adipose Nuclei	Adipose
12	chr1:172929000-172929800	Enhancers	HSMM	muscle
13	chr1:172929000-172930000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:172929000-172930000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:172929000-172930000	Enhancers	Pancreas	Pancrea
16	chr1:172929000-172930000	Enhancers	NHDF-Ad	bronchial
17	chr1:172929000-172930000	Enhancers	Osteobl	bone
18	chr1:172929000-172930200	Enhancers	NHLF	lung
19	chr1:172929200-172929600	Weak transcription	Fetal Stomach	stomach
20	chr1:172929200-172930000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:172929200-172930000	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr1:172929200-172930000	Enhancers	Placenta	Placenta
23	chr1:172929200-172930000	Enhancers	Ovary	ovary
24	chr1:172929200-172930000	Enhancers	A549	lung
25	chr1:172929200-172930000	Enhancers	NH-A	brain
26	chr1:172929200-172930200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:172929400-172930000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:172929400-172930000	Enhancers	Placenta Amnion	Placenta Amnion
29	chr1:172929400-172930200	Enhancers	NHEK	skin

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