The 2.0 version of rSNPBase

Variant report

Variant rs10912498
Chromosome Location chr1:172902875-172902876
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172897400-172903000 Weak transcription Esophagus oesophagus
2 chr1:172897600-172903000 Weak transcription Stomach Smooth Muscle stomach
3 chr1:172897800-172903000 Weak transcription Fetal Stomach stomach
4 chr1:172898400-172903400 Weak transcription Rectal Smooth Muscle rectum
5 chr1:172899200-172903200 Weak transcription NH-A brain
6 chr1:172899600-172903200 Weak transcription Colon Smooth Muscle Colon
7 chr1:172899600-172903200 Weak transcription HSMMtube muscle
8 chr1:172900400-172903000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr1:172900600-172906000 Enhancers HUVEC blood vessel
10 chr1:172900800-172904200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:172900800-172904200 Enhancers Dnd41 blood
12 chr1:172900800-172904200 Enhancers NHLF lung
13 chr1:172900800-172904800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:172900800-172905000 Enhancers Muscle Satellite Cultured Cells --
15 chr1:172901200-172903800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr1:172901400-172903200 Enhancers NHDF-Ad bronchial
17 chr1:172901400-172904000 Enhancers HepG2 liver
18 chr1:172901400-172904200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:172901600-172903000 Enhancers Hela-S3 cervix
20 chr1:172901600-172903200 Enhancers K562 blood
21 chr1:172901600-172905200 Weak transcription Spleen Spleen
22 chr1:172901800-172903800 Enhancers Placenta Placenta
23 chr1:172901800-172904000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
24 chr1:172901800-172904200 Enhancers Osteobl bone
25 chr1:172901800-172904400 Enhancers NHEK skin
26 chr1:172901800-172904600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:172901800-172904600 Enhancers HMEC breast
28 chr1:172902000-172903000 Weak transcription Adipose Nuclei Adipose
29 chr1:172902000-172903200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:172902000-172904000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:172902200-172903400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:172902200-172903600 Enhancers Stomach Mucosa stomach
33 chr1:172902200-172904200 Enhancers Primary hematopoietic stem cells short term culture blood
34 chr1:172902200-172904800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:172902400-172903000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr1:172902400-172903000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:172902400-172903200 Weak transcription HSMM muscle
38 chr1:172902400-172903400 Weak transcription Left Ventricle heart
39 chr1:172902400-172903400 Weak transcription Small Intestine intestine
40 chr1:172902400-172903600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr1:172902400-172904200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr1:172902600-172903200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr1:172902600-172908800 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr1:172902800-172903200 Weak transcription Placenta Amnion Placenta Amnion
45 chr1:172902800-172903200 Active TSS A549 lung
46 chr1:172902800-172903800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:172902800-172904200 Enhancers Primary monocytes fromperipheralblood blood
48 chr1:172902800-172908800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015