Variant report

Variant	rs73034163
Chromosome Location	chr1:173083421-173083422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10912498	1.00[EUR][1000 genomes]
rs12078276	1.00[EUR][1000 genomes]
rs12097832	1.00[EUR][1000 genomes]
rs13376667	1.00[EUR][1000 genomes]
rs16845467	1.00[EUR][1000 genomes]
rs57630015	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682126	1.00[EUR][1000 genomes]
rs6682781	1.00[AMR][1000 genomes]
rs73034154	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034169	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173080400-173083800	Enhancers	Primary B cells from cord blood	blood
2	chr1:173080400-173084000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:173080600-173083800	Enhancers	HUVEC	blood vessel
4	chr1:173081000-173083800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:173081200-173084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:173081200-173084000	Enhancers	NHEK	skin
7	chr1:173081600-173083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:173081600-173083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:173081600-173091200	Weak transcription	NHDF-Ad	bronchial
10	chr1:173081800-173083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:173082400-173091200	Weak transcription	NHLF	lung
12	chr1:173082800-173086400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr1:173082800-173091000	Weak transcription	HSMM	muscle
14	chr1:173083200-173083600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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