Variant report

Variant	rs6682781
Chromosome Location	chr1:173085677-173085678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11576111	0.97[AFR][1000 genomes]
rs11590691	0.90[AFR][1000 genomes]
rs57630015	1.00[AMR][1000 genomes]
rs61400165	0.89[AFR][1000 genomes]
rs73034154	1.00[AMR][1000 genomes]
rs73034163	1.00[AMR][1000 genomes]
rs73034169	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173081600-173091200	Weak transcription	NHDF-Ad	bronchial
2	chr1:173082400-173091200	Weak transcription	NHLF	lung
3	chr1:173082800-173086400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr1:173082800-173091000	Weak transcription	HSMM	muscle
5	chr1:173083800-173086400	Weak transcription	Primary B cells from cord blood	blood
6	chr1:173083800-173086400	Weak transcription	HUVEC	blood vessel
7	chr1:173084000-173085800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:173084000-173085800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:173084400-173091000	Weak transcription	Fetal Intestine Large	intestine
10	chr1:173085600-173086000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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