Variant report

Variant	rs11576111
Chromosome Location	chr1:173096749-173096750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11590691	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61400165	0.85[AFR][1000 genomes]
rs6682781	0.97[AFR][1000 genomes]
rs72718907	0.84[EUR][1000 genomes]
rs72718913	0.84[EUR][1000 genomes]
rs72718914	0.89[EUR][1000 genomes]
rs73034169	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173092800-173097800	Weak transcription	Pancreas	Pancrea
2	chr1:173093000-173097400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:173093000-173097400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:173093000-173097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:173093000-173097800	Weak transcription	HMEC	breast
6	chr1:173093000-173101600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:173093000-173106600	Weak transcription	HSMMtube	muscle
8	chr1:173093200-173097600	Weak transcription	NHEK	skin
9	chr1:173093200-173097800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:173093400-173097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:173095800-173101600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:173096400-173096800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:173096400-173097000	Flanking Active TSS	Liver	Liver
14	chr1:173096400-173097000	Enhancers	Small Intestine	intestine
15	chr1:173096400-173098000	Enhancers	Stomach Mucosa	stomach
16	chr1:173096400-173098200	Enhancers	Fetal Intestine Small	intestine
17	chr1:173096400-173098200	Flanking Active TSS	HepG2	liver
18	chr1:173096600-173098200	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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