Variant report

Variant	rs72718907
Chromosome Location	chr1:173011652-173011653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11576111	0.84[EUR][1000 genomes]
rs11590691	0.84[EUR][1000 genomes]
rs72718913	0.89[EUR][1000 genomes]
rs72718914	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173008400-173012000	Weak transcription	NHEK	skin
2	chr1:173008600-173011800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:173008600-173012000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:173008800-173012200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:173009000-173012000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr1:173011200-173012000	Enhancers	HUVEC	blood vessel
7	chr1:173011400-173011800	Weak transcription	A549	lung
8	chr1:173011400-173013600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:173011600-173013200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:173011600-173013200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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