Variant report

Variant	rs7529929
Chromosome Location	chr1:173172184-173172185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172794787..172796035-chr1:173170815..173172252,9	MCF-7	breast:
2	chr1:172713820..172715109-chr1:173171136..173172184,7	MCF-7	breast:

rs_ID	r²[population]
rs13376667	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1418192	1.00[CEU][hapmap]
rs16845740	1.00[CEU][hapmap]
rs2422342	1.00[CEU][hapmap]
rs6681901	1.00[CEU][hapmap]
rs6682126	1.00[CEU][hapmap]
rs6689832	1.00[CEU][hapmap]
rs6700353	1.00[CEU][hapmap]
rs947503	1.00[CEU][hapmap]

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
2	chr1:173160400-173174400	Weak transcription	Spleen	Spleen
3	chr1:173160600-173176000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:173165000-173173000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:173165400-173173200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:173166000-173172800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:173169400-173173400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:173170200-173173200	Flanking Active TSS	HUVEC	blood vessel
9	chr1:173170400-173173400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:173170400-173177000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:173170600-173172200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:173170600-173172400	Transcr. at gene 5' and 3'	HSMM	muscle
13	chr1:173171000-173176400	Flanking Active TSS	Dnd41	blood
14	chr1:173171200-173172200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:173171200-173172200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:173171200-173172200	Enhancers	Ovary	ovary
17	chr1:173171200-173172200	Enhancers	NHEK	skin
18	chr1:173171200-173172400	Enhancers	Primary B cells from peripheral blood	blood
19	chr1:173171400-173172200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:173171400-173172400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr1:173171400-173173200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:173171400-173174400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:173171400-173174600	Weak transcription	NHDF-Ad	bronchial
24	chr1:173171600-173172200	Flanking Active TSS	HepG2	liver
25	chr1:173171600-173172200	Enhancers	NH-A	brain
26	chr1:173171600-173174600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:173171800-173172200	Enhancers	H9 Cell Line	embryonic stem cell
28	chr1:173171800-173172200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:173171800-173172200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:173171800-173172200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:173171800-173172200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:173171800-173172200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:173171800-173172200	Enhancers	Right Atrium	heart
34	chr1:173171800-173172200	Flanking Active TSS	HSMMtube	muscle
35	chr1:173171800-173172200	Enhancers	NHLF	lung
36	chr1:173171800-173172200	Enhancers	Osteobl	bone
37	chr1:173171800-173172400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr1:173171800-173172400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr1:173171800-173172400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr1:173171800-173172400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr1:173171800-173172600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr1:173171800-173172800	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr1:173171800-173172800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr1:173171800-173172800	Weak transcription	Primary T cells from cord blood	blood
45	chr1:173171800-173173000	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr1:173171800-173174400	Weak transcription	Fetal Stomach	stomach
47	chr1:173171800-173175600	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr1:173172000-173172200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr1:173172000-173172200	Enhancers	Colon Smooth Muscle	Colon
50	chr1:173172000-173172200	Flanking Active TSS	GM12878-XiMat	blood

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