Variant report

Variant	rs16845740
Chromosome Location	chr1:173332899-173332900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10798270	1.00[EUR][1000 genomes]
rs1418192	1.00[CEU][hapmap]
rs1418193	1.00[EUR][1000 genomes]
rs16845817	0.82[AFR][1000 genomes]
rs1832847	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2422342	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2422428	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4916329	1.00[EUR][1000 genomes]
rs6669012	1.00[EUR][1000 genomes]
rs6671598	1.00[EUR][1000 genomes]
rs6678135	1.00[EUR][1000 genomes]
rs6681901	1.00[CEU][hapmap]
rs6689832	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6696532	1.00[EUR][1000 genomes]
rs6700353	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73039105	1.00[EUR][1000 genomes]
rs73039113	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73039196	1.00[EUR][1000 genomes]
rs73041112	1.00[EUR][1000 genomes]
rs73041128	1.00[EUR][1000 genomes]
rs7529929	1.00[CEU][hapmap]
rs7544153	1.00[EUR][1000 genomes]
rs947503	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
2	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
3	chr1:173330400-173337000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:173330400-173344800	Weak transcription	Primary T cells from cord blood	blood
5	chr1:173330400-173355400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:173332600-173333200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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