Variant report

Variant	rs16845817
Chromosome Location	chr1:173362070-173362071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173354554..173358698-chr1:173361290..173364638,4	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1418192	1.00[CEU][hapmap]
rs16845740	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs2422342	1.00[CEU][hapmap]
rs2422428	0.82[AFR][1000 genomes]
rs59010381	1.00[EUR][1000 genomes]
rs6425225	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6681901	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6689832	1.00[CEU][hapmap]
rs6700353	1.00[CEU][hapmap]
rs73039113	0.82[AFR][1000 genomes]
rs73041119	1.00[EUR][1000 genomes]
rs7512403	1.00[EUR][1000 genomes]
rs7523278	1.00[EUR][1000 genomes]
rs7529929	1.00[CEU][hapmap]
rs7549638	1.00[EUR][1000 genomes]
rs947503	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173345600-173368000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173346800-173363800	Weak transcription	Aorta	Aorta
3	chr1:173347200-173375000	Weak transcription	Spleen	Spleen
4	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
5	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:173354800-173363800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:173354800-173376000	Weak transcription	Primary B cells from cord blood	blood
8	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
9	chr1:173356400-173371400	Weak transcription	GM12878-XiMat	blood
10	chr1:173360600-173363000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:173360600-173364000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:173360800-173363400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:173361000-173362200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:173361000-173362400	Enhancers	HSMM	muscle
15	chr1:173361200-173362800	Enhancers	Fetal Lung	lung
16	chr1:173361600-173362200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:173361600-173362600	Enhancers	NHDF-Ad	bronchial
18	chr1:173361600-173363000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:173361600-173363400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr1:173361600-173363600	Enhancers	Osteobl	bone
21	chr1:173361600-173368400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:173361800-173363000	Enhancers	NH-A	brain
23	chr1:173362000-173362200	Enhancers	A549	lung
24	chr1:173362000-173362400	Active TSS	Rectal Smooth Muscle	rectum
25	chr1:173362000-173362800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:173362000-173362800	Enhancers	Fetal Heart	heart
27	chr1:173362000-173363000	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr1:173362000-173363000	Enhancers	Hela-S3	cervix
29	chr1:173362000-173363000	Enhancers	HMEC	breast
30	chr1:173362000-173363000	Enhancers	K562	blood
31	chr1:173362000-173363000	Enhancers	NHEK	skin
32	chr1:173362000-173363000	Enhancers	NHLF	lung
33	chr1:173362000-173363400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr1:173362000-173364200	Enhancers	HSMMtube	muscle

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