Variant report

Variant	rs59010381
Chromosome Location	chr1:173366162-173366163
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173364811..173366851-chr1:173366862..173369819,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16845817	1.00[EUR][1000 genomes]
rs6425225	1.00[EUR][1000 genomes]
rs73041119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7512403	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7523278	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544153	1.00[AMR][1000 genomes]
rs7549638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173345600-173368000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173347200-173375000	Weak transcription	Spleen	Spleen
3	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
4	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:173354800-173376000	Weak transcription	Primary B cells from cord blood	blood
6	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
7	chr1:173356400-173371400	Weak transcription	GM12878-XiMat	blood
8	chr1:173361600-173368400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:173362400-173369600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:173362600-173371200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:173362600-173381200	Weak transcription	Ovary	ovary
12	chr1:173362800-173371600	Weak transcription	Left Ventricle	heart
13	chr1:173362800-173374400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:173362800-173375800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:173362800-173379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:173362800-173382600	Weak transcription	Fetal Heart	heart
17	chr1:173363000-173374200	Weak transcription	HMEC	breast
18	chr1:173363000-173374400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:173363000-173375800	Weak transcription	K562	blood
20	chr1:173363000-173379000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:173363400-173374200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:173363800-173389400	Weak transcription	Fetal Lung	lung
23	chr1:173364000-173374200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:173364000-173376000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:173365000-173385200	Weak transcription	Fetal Stomach	stomach
26	chr1:173365200-173372400	Weak transcription	HSMMtube	muscle
27	chr1:173365200-173382600	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:173365600-173375800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr1:173365600-173376000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links