Variant report

Variant	rs6425225
Chromosome Location	chr1:173368264-173368265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173364811..173366851-chr1:173366862..173369819,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16845817	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59010381	1.00[EUR][1000 genomes]
rs73041119	1.00[EUR][1000 genomes]
rs7512403	1.00[EUR][1000 genomes]
rs7523278	1.00[EUR][1000 genomes]
rs7549638	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173347200-173375000	Weak transcription	Spleen	Spleen
2	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
3	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:173354800-173376000	Weak transcription	Primary B cells from cord blood	blood
5	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
6	chr1:173356400-173371400	Weak transcription	GM12878-XiMat	blood
7	chr1:173361600-173368400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:173362400-173369600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:173362600-173371200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:173362600-173381200	Weak transcription	Ovary	ovary
11	chr1:173362800-173371600	Weak transcription	Left Ventricle	heart
12	chr1:173362800-173374400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:173362800-173375800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:173362800-173379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:173362800-173382600	Weak transcription	Fetal Heart	heart
16	chr1:173363000-173374200	Weak transcription	HMEC	breast
17	chr1:173363000-173374400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:173363000-173375800	Weak transcription	K562	blood
19	chr1:173363000-173379000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:173363400-173374200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:173363800-173389400	Weak transcription	Fetal Lung	lung
22	chr1:173364000-173374200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:173364000-173376000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:173365000-173385200	Weak transcription	Fetal Stomach	stomach
25	chr1:173365200-173372400	Weak transcription	HSMMtube	muscle
26	chr1:173365200-173382600	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:173365600-173375800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr1:173365600-173376000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:173367000-173371400	Weak transcription	Psoas Muscle	Psoas
30	chr1:173367200-173375800	Weak transcription	Thymus	Thymus
31	chr1:173367800-173379600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:173368000-173371400	Strong transcription	Primary T cells from cord blood	blood
33	chr1:173368200-173370800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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