Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173327121..173329695-chr1:173331710..173334365,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231615	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10798270	1.00[EUR][1000 genomes]
rs1418192	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1418193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16845740	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1832846	0.85[AMR][1000 genomes]
rs1832847	1.00[EUR][1000 genomes]
rs2422428	1.00[EUR][1000 genomes]
rs4916329	1.00[EUR][1000 genomes]
rs6669012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6671598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6678135	1.00[EUR][1000 genomes]
rs6681901	1.00[CEU][hapmap]
rs6689832	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6696532	1.00[EUR][1000 genomes]
rs6700353	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73039105	1.00[EUR][1000 genomes]
rs73039113	1.00[EUR][1000 genomes]
rs73039196	1.00[EUR][1000 genomes]
rs73041112	1.00[EUR][1000 genomes]
rs73041128	1.00[EUR][1000 genomes]
rs7529929	1.00[CEU][hapmap]
rs7544153	1.00[EUR][1000 genomes]
rs947503	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
3	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
4	chr1:173325000-173329400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:173325200-173328800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:173325800-173329600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:173326000-173329600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:173326200-173329600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr1:173326200-173329600	Weak transcription	Dnd41	blood
10	chr1:173326200-173329800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:173326600-173329200	Weak transcription	GM12878-XiMat	blood

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