Variant report

Variant	rs1418192
Chromosome Location	chr1:173320066-173320067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10399875	1.00[EUR][1000 genomes]
rs1418193	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845740	1.00[CEU][hapmap]
rs1832846	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2422342	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4916330	1.00[EUR][1000 genomes]
rs6669012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6671598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681901	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6689832	1.00[CEU][hapmap]
rs6700353	1.00[CEU][hapmap]
rs7529929	1.00[CEU][hapmap]
rs947503	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv523009	chr1:173305632-173324296	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173301400-173321200	Weak transcription	Ovary	ovary
3	chr1:173309200-173324600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
5	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
6	chr1:173318600-173320400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:173319400-173320600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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