Variant report

Variant	rs73039105
Chromosome Location	chr1:173330394-173330395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10798270	1.00[EUR][1000 genomes]
rs1418193	1.00[EUR][1000 genomes]
rs16845740	1.00[EUR][1000 genomes]
rs1832847	1.00[EUR][1000 genomes]
rs2422342	1.00[EUR][1000 genomes]
rs2422428	1.00[EUR][1000 genomes]
rs4916329	1.00[EUR][1000 genomes]
rs6669012	1.00[EUR][1000 genomes]
rs6671598	1.00[EUR][1000 genomes]
rs6678135	1.00[EUR][1000 genomes]
rs6689832	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6696532	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6700353	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73039113	1.00[EUR][1000 genomes]
rs73039196	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73041112	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73041128	1.00[EUR][1000 genomes]
rs7544153	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs947503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
2	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
3	chr1:173328800-173330400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:173329200-173330400	Enhancers	Primary T cells from cord blood	blood
5	chr1:173329200-173330400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:173329200-173330600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:173329200-173331000	Enhancers	GM12878-XiMat	blood
8	chr1:173329400-173330400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr1:173329400-173330400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr1:173329400-173330400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:173329600-173330400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:173329600-173330400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:173329600-173331000	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:173329800-173330400	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr1:173330000-173330400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:173330000-173330400	Enhancers	Primary B cells from cord blood	blood
17	chr1:173330000-173330600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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