Variant report

Variant	rs1883927
Chromosome Location	chr1:173077080-173077081
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10798260	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10912526	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10912527	0.85[EUR][1000 genomes]
rs12025670	0.85[ASN][1000 genomes]
rs12034760	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12038100	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1883928	1.00[ASN][1000 genomes]
rs35391404	0.92[EUR][1000 genomes]
rs6425201	0.85[EUR][1000 genomes]
rs6673681	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7537126	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173073200-173081200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:173076400-173078200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links