Variant report

Variant	rs10912516
Chromosome Location	chr1:172989576-172989577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1033465	0.82[AFR][1000 genomes]
rs10912517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10912518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10912520	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10912522	0.92[AFR][1000 genomes]
rs12066784	0.92[AFR][1000 genomes]
rs12067458	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070371	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070374	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071333	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079981	0.92[AFR][1000 genomes]
rs55993240	1.00[AMR][1000 genomes]
rs59314260	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129510	1.00[AMR][1000 genomes]
rs74129514	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172982600-172990800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:172984400-172990600	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:172987200-172990800	Enhancers	Primary B cells from cord blood	blood
4	chr1:172988400-172989600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:172989400-172989600	Flanking Active TSS	GM12878-XiMat	blood
6	chr1:172989400-172990200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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