Variant report

Variant	rs12079981
Chromosome Location	chr1:172998177-172998178
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10912516	0.92[AFR][1000 genomes]
rs10912517	0.92[AFR][1000 genomes]
rs10912518	0.92[AFR][1000 genomes]
rs10912520	0.95[AFR][1000 genomes]
rs10912522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067458	0.97[AFR][1000 genomes]
rs12070371	0.97[AFR][1000 genomes]
rs12070374	0.98[AFR][1000 genomes]
rs12071333	0.98[AFR][1000 genomes]
rs12073776	1.00[AMR][1000 genomes]
rs55936451	1.00[AMR][1000 genomes]
rs56089878	1.00[AMR][1000 genomes]
rs57008526	1.00[AMR][1000 genomes]
rs57256775	1.00[AMR][1000 genomes]
rs57931692	1.00[AMR][1000 genomes]
rs59267044	1.00[AMR][1000 genomes]
rs59314260	0.98[AFR][1000 genomes]
rs60158523	1.00[AMR][1000 genomes]
rs60825363	1.00[AMR][1000 genomes]
rs6425209	1.00[AMR][1000 genomes]
rs74125826	1.00[AMR][1000 genomes]
rs74125829	1.00[AMR][1000 genomes]
rs74126792	1.00[AMR][1000 genomes]
rs74126798	1.00[AMR][1000 genomes]
rs74129514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129516	1.00[AMR][1000 genomes]
rs74129520	1.00[AMR][1000 genomes]
rs74129521	1.00[AMR][1000 genomes]
rs74129522	1.00[AMR][1000 genomes]
rs74129523	1.00[AMR][1000 genomes]
rs74129525	1.00[AMR][1000 genomes]
rs74129526	1.00[AMR][1000 genomes]
rs74129527	1.00[AMR][1000 genomes]
rs74129528	1.00[AMR][1000 genomes]
rs74129529	1.00[AMR][1000 genomes]
rs74129530	1.00[AMR][1000 genomes]
rs74129531	1.00[AMR][1000 genomes]
rs74129534	1.00[AMR][1000 genomes]
rs74129538	1.00[AMR][1000 genomes]
rs74129543	1.00[AMR][1000 genomes]
rs973185	1.00[AMR][1000 genomes]
rs980003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172995800-173008200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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