Variant report

Variant	rs74125829
Chromosome Location	chr1:172939968-172939969
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10912522	1.00[AMR][1000 genomes]
rs12066784	1.00[AMR][1000 genomes]
rs12073776	1.00[AMR][1000 genomes]
rs12079981	1.00[AMR][1000 genomes]
rs55936451	1.00[AMR][1000 genomes]
rs56089878	1.00[AMR][1000 genomes]
rs57008526	1.00[AMR][1000 genomes]
rs57256775	1.00[AMR][1000 genomes]
rs57931692	1.00[AMR][1000 genomes]
rs59267044	1.00[AMR][1000 genomes]
rs60158523	1.00[AMR][1000 genomes]
rs60825363	1.00[AMR][1000 genomes]
rs6425209	1.00[AMR][1000 genomes]
rs74125826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125830	0.97[AFR][1000 genomes]
rs74126792	1.00[AMR][1000 genomes]
rs74126798	1.00[AMR][1000 genomes]
rs74129514	1.00[AMR][1000 genomes]
rs74129516	1.00[AMR][1000 genomes]
rs74129520	1.00[AMR][1000 genomes]
rs74129521	1.00[AMR][1000 genomes]
rs74129522	1.00[AMR][1000 genomes]
rs74129523	1.00[AMR][1000 genomes]
rs74129525	1.00[AMR][1000 genomes]
rs74129526	1.00[AMR][1000 genomes]
rs74129527	1.00[AMR][1000 genomes]
rs74129528	1.00[AMR][1000 genomes]
rs74129529	1.00[AMR][1000 genomes]
rs74129530	1.00[AMR][1000 genomes]
rs74129531	1.00[AMR][1000 genomes]
rs74129534	1.00[AMR][1000 genomes]
rs74129538	1.00[AMR][1000 genomes]
rs74129543	1.00[AMR][1000 genomes]
rs973185	1.00[AMR][1000 genomes]
rs980003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172935800-172940600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:172935800-172940600	Enhancers	HSMM	muscle
3	chr1:172936000-172941200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:172936200-172944800	Weak transcription	Stomach Mucosa	stomach
5	chr1:172936400-172941800	Enhancers	NHDF-Ad	bronchial
6	chr1:172937200-172941000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:172938200-172941800	Enhancers	HSMMtube	muscle
8	chr1:172938600-172940800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:172938600-172941200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:172938800-172940000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:172938800-172940000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:172938800-172940000	Enhancers	Osteobl	bone
13	chr1:172938800-172940600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:172938800-172940600	Enhancers	HUVEC	blood vessel
15	chr1:172938800-172940800	Enhancers	NH-A	brain
16	chr1:172938800-172941600	Enhancers	Placenta	Placenta
17	chr1:172938800-172941600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:172938800-172941800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:172938800-172942000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:172938800-172942800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr1:172938800-172943200	Enhancers	HMEC	breast
22	chr1:172938800-172943200	Enhancers	NHEK	skin
23	chr1:172939000-172940400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:172939200-172942000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:172939200-172944600	Weak transcription	HepG2	liver
26	chr1:172939400-172942400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:172939600-172941600	Enhancers	Pancreas	Pancrea
28	chr1:172939600-172941600	Enhancers	A549	lung
29	chr1:172939600-172945000	Weak transcription	Hela-S3	cervix
30	chr1:172939800-172940200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:172939800-172945400	Weak transcription	NHLF	lung

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