Variant report

Variant	rs973185
Chromosome Location	chr1:173082917-173082918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10912522	1.00[AMR][1000 genomes]
rs12066784	1.00[AMR][1000 genomes]
rs12073776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079981	1.00[AMR][1000 genomes]
rs55936451	1.00[AMR][1000 genomes]
rs56089878	1.00[AMR][1000 genomes]
rs57008526	1.00[AMR][1000 genomes]
rs57256775	1.00[AMR][1000 genomes]
rs57931692	1.00[AMR][1000 genomes]
rs59267044	1.00[AMR][1000 genomes]
rs60158523	1.00[AMR][1000 genomes]
rs60825363	1.00[AMR][1000 genomes]
rs6425209	1.00[AMR][1000 genomes]
rs74125826	1.00[AMR][1000 genomes]
rs74125829	1.00[AMR][1000 genomes]
rs74126792	1.00[AMR][1000 genomes]
rs74126798	1.00[AMR][1000 genomes]
rs74129514	1.00[AMR][1000 genomes]
rs74129516	1.00[AMR][1000 genomes]
rs74129520	1.00[AMR][1000 genomes]
rs74129521	1.00[AMR][1000 genomes]
rs74129522	1.00[AMR][1000 genomes]
rs74129523	1.00[AMR][1000 genomes]
rs74129525	1.00[AMR][1000 genomes]
rs74129526	1.00[AMR][1000 genomes]
rs74129527	1.00[AMR][1000 genomes]
rs74129528	1.00[AMR][1000 genomes]
rs74129529	1.00[AMR][1000 genomes]
rs74129530	1.00[AMR][1000 genomes]
rs74129531	1.00[AMR][1000 genomes]
rs74129534	1.00[AMR][1000 genomes]
rs74129538	1.00[AMR][1000 genomes]
rs74129543	1.00[AMR][1000 genomes]
rs980003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173080400-173083200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr1:173080400-173083800	Enhancers	Primary B cells from cord blood	blood
3	chr1:173080400-173084000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:173080600-173083800	Enhancers	HUVEC	blood vessel
5	chr1:173081000-173083000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:173081000-173083800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:173081200-173083000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:173081200-173083000	Enhancers	HMEC	breast
9	chr1:173081200-173083400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:173081200-173084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:173081200-173084000	Enhancers	NHEK	skin
12	chr1:173081600-173083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:173081600-173083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:173081600-173091200	Weak transcription	NHDF-Ad	bronchial
15	chr1:173081800-173083600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:173082400-173091200	Weak transcription	NHLF	lung
17	chr1:173082800-173086400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr1:173082800-173091000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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