Variant report

Variant	rs74126792
Chromosome Location	chr1:172979538-172979539
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172977791..172981145-chr1:172982435..172984642,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10732990	0.84[AFR][1000 genomes]
rs10912522	1.00[AMR][1000 genomes]
rs12066784	1.00[AMR][1000 genomes]
rs12073776	1.00[AMR][1000 genomes]
rs12079981	1.00[AMR][1000 genomes]
rs55936451	1.00[AMR][1000 genomes]
rs55993240	0.94[AFR][1000 genomes]
rs56089878	1.00[AMR][1000 genomes]
rs57008526	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57256775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57931692	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59267044	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60158523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60825363	1.00[AMR][1000 genomes]
rs6425196	0.84[AFR][1000 genomes]
rs6425209	1.00[AMR][1000 genomes]
rs74125826	1.00[AMR][1000 genomes]
rs74125829	1.00[AMR][1000 genomes]
rs74126798	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129514	1.00[AMR][1000 genomes]
rs74129516	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129520	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129521	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129522	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129523	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129525	1.00[AMR][1000 genomes]
rs74129526	1.00[AMR][1000 genomes]
rs74129527	1.00[AMR][1000 genomes]
rs74129528	1.00[AMR][1000 genomes]
rs74129529	1.00[AMR][1000 genomes]
rs74129530	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129531	1.00[AMR][1000 genomes]
rs74129534	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129538	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129543	1.00[AMR][1000 genomes]
rs973185	1.00[AMR][1000 genomes]
rs980003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172977800-172982600	Weak transcription	Dnd41	blood
2	chr1:172978400-172979600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr1:172978400-172979800	Enhancers	Primary monocytes fromperipheralblood	blood

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