Variant report
| Variant | rs55993240 |
|---|---|
| Chromosome Location | chr1:173001204-173001205 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10912516 | 1.00[AMR][1000 genomes] |
| rs10912517 | 1.00[AMR][1000 genomes] |
| rs10912518 | 1.00[AMR][1000 genomes] |
| rs10912520 | 1.00[AMR][1000 genomes] |
| rs12067458 | 1.00[AMR][1000 genomes] |
| rs12070371 | 1.00[AMR][1000 genomes] |
| rs12070374 | 1.00[AMR][1000 genomes] |
| rs12071333 | 1.00[AMR][1000 genomes] |
| rs57008526 | 0.94[AFR][1000 genomes] |
| rs57256775 | 0.94[AFR][1000 genomes] |
| rs57931692 | 0.88[AFR][1000 genomes] |
| rs59314260 | 1.00[AMR][1000 genomes] |
| rs60158523 | 0.94[AFR][1000 genomes] |
| rs74126792 | 0.94[AFR][1000 genomes] |
| rs74126798 | 1.00[AFR][1000 genomes] |
| rs74129510 | 1.00[AMR][1000 genomes] |
| rs74129516 | 0.94[AFR][1000 genomes] |
| rs74129520 | 0.94[AFR][1000 genomes] |
| rs74129521 | 0.94[AFR][1000 genomes] |
| rs74129522 | 0.94[AFR][1000 genomes] |
| rs74129523 | 0.94[AFR][1000 genomes] |
| rs74129530 | 0.94[AFR][1000 genomes] |
| rs74129534 | 0.94[AFR][1000 genomes] |
| rs74129538 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831904 | chr1:172912110-173070429 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv533953 | chr1:172939335-173133255 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:172995800-173008200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
